QM/MM Simulations of Vibrational Spectra in Bacteriorhodopsin and Channelrhodopsin-2 Supporting Information
نویسندگان
چکیده
Here, we document the performance of different DFT and DFTB methods with respect to the C−O stretch vibration, both in terms of absolute frequencies and effects of hydrogen bonds on the frequencies. We demonstrate, that PBE/def2-TZVP is a suitable reference for the C−O stretch frequency in carboxylic acids. In the following text, the abbreviations ME (mean error), MAE (mean absolute error), MSE (mean squared error) and GGA (generalized gradient approximation) are used.
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QM/MM simulations of vibrational spectra of bacteriorhodopsin and channelrhodopsin-2.
Channelrhodopsin-2 is a light-gated ion channel, which has been studied intensively over the last decade. Vibrational spectroscopic experiments started to shed light on the structural changes, that occur during the photocycle, especially in the hydrogen-bonded network surrounding the protonated D156 and C128 - the DC gate. However, the interpretation of these experiments was only based on homol...
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